{ "_id": "6acf3d21d9de2f3f33fc96b1", "Package": "heartbeatr", "Type": "Package", "Title": "A Workflow to Process Data Collected with PULSE Systems", "Version": "1.0.0", "Authors@R": "c(\nperson(\"Rui\", \"Seabra\", , \"ruisea@gmail.com\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-0240-3992\")),\nperson(\"Fernando\", \"Lima\", , \"fplima@gmail.com\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0001-9575-9834\"))\n)", "Description": "Given one or multiple paths to files produced by a PULSE\nmulti-channel or a PULSE one-channel system\n() from a single experiment: [1]\ncheck pulse files for inconsistencies and read/merge all data,\n[2] split across time windows, [3] interpolate and smooth to\noptimize the dataset, [4] compute the heart rate frequency for\neach channel/window, and [5] facilitate quality control,\nsummarising and plotting. Heart rate frequency is calculated\nusing the Automatic Multi-scale Peak Detection algorithm\nproposed by Felix Scholkmann and team. For more details see\nScholkmann et al (2012) . Check original\ncode at . ElectricBlue is a\nnon-profit technology transfer startup creating\nresearch-oriented solutions for the scientific community\n().", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "LazyData": "true", "Config/testthat/edition": "3", "RoxygenNote": "7.3.3", "VignetteBuilder": "knitr", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-14 07:53:54 UTC", "User": "root" }, "Author": "Rui Seabra [aut, cre] (ORCID:\n), Fernando Lima [aut]\n(ORCID: )", "Maintainer": "Rui Seabra ", "Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\nlibavfilter-dev libicu-dev libssl-dev libproj-dev\nlibsqlite3-dev libudunits2-dev libx11-dev", "Repository": "https://ruiseabra.r-universe.dev", "Date/Publication": "2025-09-18 09:00:02 UTC", "RemoteUrl": "https://github.com/cran/heartbeatr", "RemoteRef": "HEAD", "RemoteSha": "780301036a963b7a109a2724490ac311320005fd", "_user": "ruiseabra", "_type": "src", "_file": "heartbeatr_1.0.0.tar.gz", "_fileid": "https://r2.ropensci.org/176ef43a489b4f3aa2d8f7a7abe632c12f099d45409d37addf7ba0d1c1383198", "_filesize": 3171955, "_sha256": "176ef43a489b4f3aa2d8f7a7abe632c12f099d45409d37addf7ba0d1c1383198", "_expires": "2027-01-22T08:28:15.000Z", "_created": "2026-10-14T07:53:54.000Z", "_published": "2026-10-14T08:28:17.620Z", "_buildurl": "https://github.com/r-universe/ruiseabra/actions/runs/38530928209", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 115743919482, "time": 159, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11877653320" }, { "job": 115743919570, "time": 151, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11878676368" }, { "job": 115743919508, "time": 163, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11880075299" }, { "job": 115743919489, "time": 222, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11879573610" }, { "job": 115742486592, "time": 234, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11877772694" }, { "job": 115743919401, "time": 126, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11878446912" }, { "job": 115743919452, "time": 101, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11877658220" }, { "job": 115743919498, "time": 103, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11878347100" }, { "job": 115743919446, "time": 95, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11878621167" } ], "_upstream": "https://github.com/cran/heartbeatr", "_commit": { "id": "780301036a963b7a109a2724490ac311320005fd", "author": "Rui Seabra ", "committer": "cran-robot ", "message": "version 1.0.0\n", "time": 1758186002 }, "_maintainer": { "name": "Rui Seabra", "email": "ruisea@gmail.com", "login": "ruiseabra", "twitter": "@rui_seabra", "description": "Marine biologist at CIBIO-BIOPOLIS (Portugal). National Geographic Explorer. Co-founder of www.Electricblue.eu. Traveler, wave rider, and husband/father.", "uuid": 6738826, "orcid": "0000-0002-0240-3992" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "av", "role": "Imports" }, { "package": "cli", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "lubridate", "role": "Imports" }, { "package": "magrittr", "role": "Imports" }, { "package": "purrr", "role": "Imports" }, { "package": "readr", "role": "Imports" }, { "package": "stringr", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "transformr", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "ruiseabra", "count": 1, "uuid": 6738826 } ], "_userbio": { "uuid": 6738826, "type": "user", "name": "Rui Seabra", "followers": 2, "description": "Marine biologist at CIBIO-BIOPOLIS (Portugal). National Geographic Explorer. Co-founder of www.Electricblue.eu. Traveler, wave rider, and husband/father." }, "_downloads": { "count": 284, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/heartbeatr" }, "_searchresults": 1, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/heartbeatr.html", "extra/manual.pdf", "extra/readme.html", "extra/readme.md", "LICENSE" ], "_realowner": "ruiseabra", "_cranurl": false, "_releases": [ { "version": "1.0.0", "date": "2025-09-18" } ], "_exports": [ "find_peaks", "is.pulse", "PULSE", "PULSE_by_chunks", "pulse_choose_keep", "pulse_doublecheck", "pulse_example", "pulse_find_peaks_all_channels", "pulse_find_peaks_one_channel", "pulse_halve", "pulse_heart", "pulse_interpolate", "pulse_normalize", "pulse_optimize", "pulse_plot", "pulse_plot_one", "pulse_plot_raw", "pulse_read", "pulse_smooth", "pulse_split", "pulse_summarise" ], "_datasets": [ { "name": "pulse_data", "title": "PULSE multi-channel example data", "object": "pulse_data", "class": [ "list" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "find_peaks", "title": "Find peaks of waves in raw PULSE data", "topics": [ "find_peaks" ] }, { "page": "is.pulse", "title": "heartbeatr utility function", "topics": [ "is.pulse" ] }, { "page": "PULSE", "title": "Process PULSE data from a single experiment (STEPS 1-6)", "topics": [ "PULSE" ] }, { "page": "PULSE_by_chunks", "title": "Process PULSE data file by file (STEPS 1-6)", "topics": [ "PULSE_by_chunks" ] }, { "page": "pulse_choose_keep", "title": "(STEP 6) Choose the best heart beat frequency estimate from among two estimates derived from raw and smoothed data", "topics": [ "pulse_choose_keep" ] }, { "page": "pulse_data", "title": "PULSE multi-channel example data", "topics": [ "pulse_data" ] }, { "page": "pulse_doublecheck", "title": "(STEP 5) Fix heart rate frequencies double the real value", "topics": [ "pulse_doublecheck" ] }, { "page": "pulse_example", "title": "Get paths to pulse example files", "topics": [ "pulse_example" ] }, { "page": "pulse_find_peaks_all_channels", "title": "Determine the heartbeat rate in all channels of a PULSE split window", "topics": [ "pulse_find_peaks_all_channels" ] }, { "page": "pulse_find_peaks_one_channel", "title": "Determine the heart beat frequency in one PULSE channel", "topics": [ "pulse_find_peaks_one_channel" ] }, { "page": "pulse_halve", "title": "Halves heart beat frequencies computed by 'pulse_heart'", "topics": [ "pulse_halve" ] }, { "page": "pulse_heart", "title": "(STEP 4) Determine the heartbeat rate in all channels of a split PULSE object", "topics": [ "pulse_heart" ] }, { "page": "pulse_interpolate", "title": "Increase the number of data points in PULSE data through interpolation", "topics": [ "pulse_interpolate" ] }, { "page": "pulse_normalize", "title": "Normalize PULSE heartbeat rate estimates", "topics": [ "pulse_normalize" ] }, { "page": "pulse_optimize", "title": "(STEP 3) Optimize PULSE data through interpolation and smoothing", "topics": [ "pulse_optimize" ] }, { "page": "pulse_plot", "title": "Plot processed PULSE data", "topics": [ "pulse_plot" ] }, { "page": "pulse_plot_one", "title": "heartbeatr utility function", "topics": [ "pulse_plot_one" ] }, { "page": "pulse_plot_raw", "title": "Plot raw PULSE data", "topics": [ "pulse_plot_raw" ] }, { "page": "pulse_read", "title": "(STEP 1) Read data from all PULSE files in the target folder", "topics": [ "pulse_read" ] }, { "page": "pulse_smooth", "title": "Smooth PULSE data", "topics": [ "pulse_smooth" ] }, { "page": "pulse_split", "title": "(STEP 2) Split 'pulse_data' across sequential time windows", "topics": [ "pulse_split" ] }, { "page": "pulse_summarise", "title": "Summarise PULSE heartbeat rate estimates over new time windows", "topics": [ "pulse_summarise" ] } ], "_readme": "https://github.com/cran/heartbeatr/raw/HEAD/README.md", "_rundeps": [ "av", "bit", "bit64", "class", "classInt", "cli", "clipr", "cpp11", "crayon", "DBI", "dplyr", "e1071", "farver", "generics", "ggplot2", "glue", "gtable", "hms", "isoband", "KernSmooth", "labeling", "lifecycle", "lpSolve", "lubridate", "magrittr", "pillar", "pkgconfig", "prettyunits", "progress", "proxy", "purrr", "R6", "RColorBrewer", "Rcpp", "readr", "rlang", "s2", "S7", "scales", "sf", "stringi", "stringr", "tibble", "tidyr", "tidyselect", "timechange", "transformr", "tweenr", "tzdb", "units", "utf8", "vctrs", "viridisLite", "vroom", "withr", "wk" ], "_vignettes": [ { "source": "workflow.Rmd", "filename": "workflow.html", "title": "workflow", "engine": "knitr::rmarkdown", "headings": [ "Input data", "PULSE files", "header section", "data section", "One experiment", "The heartbeatr workflow", "import data into R with pulse_read()", "split continuous data over time windows with pulse_split()", "interpolate and smooth data with pulse_optimize()", "compute heart rates with pulse_heart()", "detect heart rate doublings with pulse_doublecheck()", "select which heart rate estimates to keep with pulse_choose_keep()", "The simple version", "Visualizing", "check all data using pulse_plot()", "inspect raw data with pulse_plot_raw()", "Optimizing parameters (bandwidth)", "Warning against HRV analyses", "Post-processing", "Normalizing", "Summarising" ], "created": "2025-09-18 09:00:02", "modified": "2025-09-18 09:00:02", "commits": 1 } ], "_score": 2.6989700043360187, "_indexed": true, "_nocasepkg": "heartbeatr", "_universes": [ "ruiseabra" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.0", "date": "2026-10-14T07:56:27.000Z", "distro": "resolute", "commit": "780301036a963b7a109a2724490ac311320005fd", "fileid": "https://r2.ropensci.org/0fc81373861330fd80cc1dd069faec6ae2aa0749f5ed758fb35b5d67fd6ef5bc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ruiseabra/actions/runs/38530928209" }, { "r": "4.6.1", "os": "linux", "version": "1.0.0", "date": "2026-10-14T07:56:10.000Z", "distro": "resolute", "commit": "780301036a963b7a109a2724490ac311320005fd", "fileid": "https://r2.ropensci.org/2488fe236458baf03a26976d4731e68f686f4fd959fc2734940f1ab49f399d44", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ruiseabra/actions/runs/38530928209" }, { "r": "4.5.3", "os": "mac", "version": "1.0.0", "date": "2026-10-14T08:25:58.000Z", "commit": "780301036a963b7a109a2724490ac311320005fd", "fileid": "https://r2.ropensci.org/62f32c61c9e9314c85178b2acf869695bf2523adea96f5939d8d1de1478829a2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ruiseabra/actions/runs/38530928209" }, { "r": "4.6.1", "os": "mac", "version": "1.0.0", "date": "2026-10-14T08:26:19.000Z", "commit": "780301036a963b7a109a2724490ac311320005fd", "fileid": "https://r2.ropensci.org/68e994fae09791ef51593b1ca13204df30ca283d3af86e1b06e6e7d875d2bb1e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ruiseabra/actions/runs/38530928209" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.0", "date": "2026-10-14T07:56:28.000Z", "commit": "780301036a963b7a109a2724490ac311320005fd", "fileid": "https://r2.ropensci.org/bc0bc2836d65fc687eecf4ecf4f8c8180121ff3ce92deb8590c40ffac3f2b7fc", "status": "success", "buildurl": "https://github.com/r-universe/ruiseabra/actions/runs/38530928209" }, { "r": "4.7.0", "os": "win", "version": "1.0.0", "date": "2026-10-14T07:55:11.000Z", "commit": "780301036a963b7a109a2724490ac311320005fd", "fileid": "https://r2.ropensci.org/eef9dfffe122109b33702e34fc5d5998d85b4c818b6d4bf01546eff94c0e3a09", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ruiseabra/actions/runs/38530928209" }, { "r": "4.5.3", "os": "win", "version": "1.0.0", "date": "2026-10-14T07:55:15.000Z", "commit": "780301036a963b7a109a2724490ac311320005fd", "fileid": "https://r2.ropensci.org/a262330f5a90e520b70d75d3741c844af529760d2f472c8b9c667ba946899bcf", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ruiseabra/actions/runs/38530928209" }, { "r": "4.6.1", "os": "win", "version": "1.0.0", "date": "2026-10-14T07:55:04.000Z", "commit": "780301036a963b7a109a2724490ac311320005fd", "fileid": "https://r2.ropensci.org/727f684e02233e55cea9eb25b8af2ff8172c79dc40c96b98d9d8e141ded53417", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ruiseabra/actions/runs/38530928209" } ] }